The chloroplast genome structure and gene content are highly conserved among land plants, providing valuable information for the studies of taxonomy and plant evolution. Viburnum odoratissimum is a well-known evergreen shrub widely distributed in Asia. It possesses excellent medicinal properties used as traditional medicine for menstrual, stomach, and kidney cramps. In this study, the complete chloroplast genome (cpDNA) of V. odoratissimum is reported and compared with five close Viburnum species and an outgroup. The cpDNA of V. odoratissimum is 158,744 bp in length and contains 130 genes with 17 genes duplicated in the inverted repeat region. The gene content, gene organization and GC content in V. odoratissimum are highly similar to other Viburnum species. A total of 270 tandem repeats is found in these plastomes, most of which are distributed in intergenic space. Differences in the location of the IR/SC boundaries reflect expansions and contractions of IR regions in all species studied. Phylogenetic analysis based on complete chloroplast genomes and the combination of barcodes indicates a sister relationship between V. odoratissimum and V. brachybotryum. Furthermore, a comparative cpDNA analysis identifies three DNA regions (trnC-petN-psbM, trnH-psbA, ndhC-trnV) containing high divergence among seven studied species that could be used as potential phylogenetic markers in taxonomic studies.
| Published in | Plant (Volume 9, Issue 2) |
| DOI | 10.11648/j.plant.20210902.12 |
| Page(s) | 28-35 |
| Creative Commons |
This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited. |
| Copyright |
Copyright © The Author(s), 2021. Published by Science Publishing Group |
Adoxaceae, Barcodes, Phylogenetic Relationship, Viburnum odoratissimum
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APA Style
Le Thi Yen, Joonho Park. (2021). The Complete Chloroplast Genome Sequence of Viburnum odoratissimum and Phylogenetic Relationship with Other Close Species in the Adoxaceae Family. Plant, 9(2), 28-35. https://doi.org/10.11648/j.plant.20210902.12
ACS Style
Le Thi Yen; Joonho Park. The Complete Chloroplast Genome Sequence of Viburnum odoratissimum and Phylogenetic Relationship with Other Close Species in the Adoxaceae Family. Plant. 2021, 9(2), 28-35. doi: 10.11648/j.plant.20210902.12
AMA Style
Le Thi Yen, Joonho Park. The Complete Chloroplast Genome Sequence of Viburnum odoratissimum and Phylogenetic Relationship with Other Close Species in the Adoxaceae Family. Plant. 2021;9(2):28-35. doi: 10.11648/j.plant.20210902.12
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Download@article{10.11648/j.plant.20210902.12,
author = {Le Thi Yen and Joonho Park},
title = {The Complete Chloroplast Genome Sequence of Viburnum odoratissimum and Phylogenetic Relationship with Other Close Species in the Adoxaceae Family},
journal = {Plant},
volume = {9},
number = {2},
pages = {28-35},
doi = {10.11648/j.plant.20210902.12},
url = {https://doi.org/10.11648/j.plant.20210902.12},
eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.plant.20210902.12},
abstract = {The chloroplast genome structure and gene content are highly conserved among land plants, providing valuable information for the studies of taxonomy and plant evolution. Viburnum odoratissimum is a well-known evergreen shrub widely distributed in Asia. It possesses excellent medicinal properties used as traditional medicine for menstrual, stomach, and kidney cramps. In this study, the complete chloroplast genome (cpDNA) of V. odoratissimum is reported and compared with five close Viburnum species and an outgroup. The cpDNA of V. odoratissimum is 158,744 bp in length and contains 130 genes with 17 genes duplicated in the inverted repeat region. The gene content, gene organization and GC content in V. odoratissimum are highly similar to other Viburnum species. A total of 270 tandem repeats is found in these plastomes, most of which are distributed in intergenic space. Differences in the location of the IR/SC boundaries reflect expansions and contractions of IR regions in all species studied. Phylogenetic analysis based on complete chloroplast genomes and the combination of barcodes indicates a sister relationship between V. odoratissimum and V. brachybotryum. Furthermore, a comparative cpDNA analysis identifies three DNA regions (trnC-petN-psbM, trnH-psbA, ndhC-trnV) containing high divergence among seven studied species that could be used as potential phylogenetic markers in taxonomic studies.},
year = {2021}
}
TY - JOUR T1 - The Complete Chloroplast Genome Sequence of Viburnum odoratissimum and Phylogenetic Relationship with Other Close Species in the Adoxaceae Family AU - Le Thi Yen AU - Joonho Park Y1 - 2021/05/08 PY - 2021 N1 - https://doi.org/10.11648/j.plant.20210902.12 DO - 10.11648/j.plant.20210902.12 T2 - Plant JF - Plant JO - Plant SP - 28 EP - 35 PB - Science Publishing Group SN - 2331-0677 UR - https://doi.org/10.11648/j.plant.20210902.12 AB - The chloroplast genome structure and gene content are highly conserved among land plants, providing valuable information for the studies of taxonomy and plant evolution. Viburnum odoratissimum is a well-known evergreen shrub widely distributed in Asia. It possesses excellent medicinal properties used as traditional medicine for menstrual, stomach, and kidney cramps. In this study, the complete chloroplast genome (cpDNA) of V. odoratissimum is reported and compared with five close Viburnum species and an outgroup. The cpDNA of V. odoratissimum is 158,744 bp in length and contains 130 genes with 17 genes duplicated in the inverted repeat region. The gene content, gene organization and GC content in V. odoratissimum are highly similar to other Viburnum species. A total of 270 tandem repeats is found in these plastomes, most of which are distributed in intergenic space. Differences in the location of the IR/SC boundaries reflect expansions and contractions of IR regions in all species studied. Phylogenetic analysis based on complete chloroplast genomes and the combination of barcodes indicates a sister relationship between V. odoratissimum and V. brachybotryum. Furthermore, a comparative cpDNA analysis identifies three DNA regions (trnC-petN-psbM, trnH-psbA, ndhC-trnV) containing high divergence among seven studied species that could be used as potential phylogenetic markers in taxonomic studies. VL - 9 IS - 2 ER -
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